1
Download and Install FSL
Visit the official FSL website and follow the installation instructions for your operating system.
2
Set Up Environment Variables
Configure your system environment variables as per the installation guide to enable command-line access.
3
Prepare Your MRI Data
Organize your MRI datasets in supported formats (e.g., NIfTI) for processing.
4
Run Basic Preprocessing
Use tools like BET for brain extraction and FLIRT for image registration to preprocess your data.
5
Explore Advanced Analysis
Apply FEAT for fMRI analysis or ProbtrackX for diffusion tractography depending on your research needs.