1
Install Scanpy
Install Scanpy using pip with the command `pip install 'scanpy[leiden]'` or via conda with `conda install -c conda-forge scanpy python-igraph leidenalg`.
2
Import Scanpy
Import the package in your Python environment using `import scanpy as sc`.
3
Load Data
Read your single-cell data into an AnnData object for processing.
4
Preprocess Data
Apply preprocessing functions such as normalization (`sc.pp.normalize_total`) and log transformation (`sc.pp.log1p`).
5
Analyze and Visualize
Perform clustering (e.g., `sc.tl.leiden`) and visualize results (e.g., `sc.pl.umap`).